Introduction
MITNANEX is a pipeline designed for mitochondrial genome assembly and annotation from Nanopore sequencing data. It aims to provide a streamlined workflow for processing long-read mitochondrial sequencing data, from raw reads to a fully annotated mitochondrial genome.
By joining this group, you can:
- Create a Docker container for all tools needed in the pipeline.
- Automate the current pipeline in Nextflow to improve scalability and reproducibility.
- Enhance documentation and usability to make the pipeline more accessible
This project is exclusively for onsite participants working in Medellín, Colombia.
Goal
- Work towards a first functional release with automated mitochondrial genome assembly, polishing, and annotation.
- Refactor the pipeline to follow nf-core best practices, ensuring modularity, scalability, and reproducibility.
- Bonus Develop an nf-core config for seamless integration with any Nextflow pipeline, allowing -profile
to work out of the box.
