This project aims to close open PRs and issues of the nf-core/reportho pipeline to finalize release 1.1.0.
Goals
- Update custom report
We need to update the custom report to include the sequence-based merging step results (if run) and exclude alignment/phylogeny results. The code for this part is partially in a separate repo, so contact me before you work on this.
- Update MultiQC report
We need to make sure that the MultiQC report contains all required information and no more (i.e. no references to alignment or phylogeny).
- Update metro map
The workflow has changed since 1.0. We need to update the metro map to reflect that.
- Verify documentation
We need to verify that all documentation files are up to date. I have already made some changes, but there might be something missing.
- Finally, submit for review
Note
I will not be available on Monday (March 24). Feel free to work on your forks and submit PRs during that day. I will review all changes on Tuesday morning (CET).
We welcome contributors of all experience levels. Feel free to get in touch on the Slack channel if you have any questions or comments.
