Project aim

We will work on nf-core/sammyseq, designed for the analysis of a brand-new NGS application to analyze the chromatin state. We want complete it by adding a new functionality: a Hi-C-like analysis of compartments, expand and improve the alignment / preprocessing part and update documentation accordingly. Any suggestions about documentation, code readability, usability and user-friendliness is warmly welcome. Open to contributors of all experience levels, tasks for beginners will be labeled “good first issue”.

Goals

  • Add compartment analysis subworkflow and components
  • Add bwa-mem alignment
  • Update the schema figure (metro map) to accurately represent the current analysis workflow
  • Solve as many open issues as we can
  • Check what is needed for the first release
A skeleton sitting on a bench. The caption above: 'Just waiting for that release'. The caption below: 'anytime soon'
category
pipelines
group leaders
Github user daisymut
Margherita Mutarelli
Github user ugoiannacchero
Ugo Maria Iannacchero
get in touch
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